Yes, apt-get clean and/or apt-get autoclean.......
Remember, in PCC, the option to clear /tmp at boot, doesn't clear /tmp like you think, it just copy it to RAM (so you need then enough RAM, else you'll experience problems in the future)
You can clean in /var/log/ (maybe you can stop the logging on the system (PCC >> System >> Enable/disable system services (I have a Dutch installation, so maybe it's called something else) => there you can disable 'atd', 'crond' and 'syslog'
And of course cleaning up the cached rpms! (see beginning of my post) - and maybe you can disable the function in Synaptic to keep all downloaded packages....